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Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus

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dc.contributor.authorHarr, Bettina
dc.contributor.authorKarakoç, Emre
dc.contributor.authorNeme, Rafik
dc.contributor.authorTeschke, Meike
dc.contributor.authorPfeifle, Christine
dc.contributor.authorPezer, Zeljka
dc.contributor.authorBabiker, Hiba
dc.contributor.authorLinnenbrink, Miriam
dc.contributor.authorMontero, Inka
dc.contributor.authorScavetta, Rick
dc.contributor.authorAbai, Mohammad Reza
dc.contributor.authorPuente Molins, Marta
dc.contributor.authorSchlegel, Mathias
dc.contributor.authorUlrich, Rainer G.
dc.contributor.authorAltmueller, Janine
dc.contributor.authorFranitza, Marek
dc.contributor.authorBuentge, Anna
dc.contributor.authorKuenzel, Sven
dc.contributor.authorTautz, Diethard
dc.date.accessioned10.07.201910:49:13
dc.date.accessioned2019-07-10T20:02:59Z
dc.date.available10.07.201910:49:13
dc.date.available2019-07-10T20:02:59Z
dc.date.issued2016
dc.departmentİstanbul Medipol Üniversitesi, Mühendislik ve Doğa Bilimleri Fakültesi, Bilgisayar Mühendisliği Bölümü
dc.descriptionWOS: 000390231600001
dc.descriptionPubMed ID: 27622383
dc.description.abstractWild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory.
dc.description.sponsorshipMax-Planck Society; DFG [HA 3139/4-1]; ERC [322564]; contract-research-project for the Bundeswehr Medical Service [M/SABX/005]en_US
dc.description.sponsorshipThis work was mostly financed by institutional resources of the Max-Planck Society, a DFG grant to B.H. and M.T. (HA 3139/4-1) and an ERC grant to D.T. (NewGenes, 322564). We thank Sonja Ihle, Susanne Krochter, Ruth Rottscheidt for contributing to collecting animals in the wild and our animal care takers for active involvement of optimizing the scheme for wild mouse keeping. The initial analysis of mice from Afghanistan was funded by contract-research-project for the Bundeswehr Medical Service M/SABX/005. We thank Bastian Pfeifer for help with software package PopGenome, Leslie Turner for discussion and Daniel M. Hooper and Trevor Price for helpful comments on the manuscript. D.T. had full access to all the data in the study and take responsibility for the integrity of the data and the accuracy of the data analysis.en_US
dc.identifier.citationHarr, B., Karakoç, E., Neme, R., Teschke, M., Pfeifle, C., Pezer, Z.,Babiker, H. ... Tautz, Diethard. (2016). Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus. Scientific Data, 3. https://dx.doi.org/10.1038/sdata.2016.75
dc.identifier.doi10.1038/sdata.2016.75
dc.identifier.issn2052-4463
dc.identifier.scopusqualityQ1
dc.identifier.urihttps://dx.doi.org/10.1038/sdata.2016.75
dc.identifier.urihttps://hdl.handle.net/20.500.12511/3780
dc.identifier.volume3
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherNature Publishing Group
dc.relation.ispartofScientific Dataen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsAttribution 4.0 International*
dc.rightsinfo:eu-repo/semantics/openAccess
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/*
dc.subjectMus Musculus
dc.subjectGenomic
dc.subjectPopulations
dc.titleGenomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus
dc.typeArticle

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